Before download

The following Vaa3D-related software packages are free, but you will have to agree to the license terms at this website and their respective license information, before downloading, using, running, editing, or changing any portion of codes in this package. Downloading any of the parts of the software means you have read and agreed to the conditions. If you do not agree, please do NOT download.

Vaa3D FileIO Matlab Toolbox 1.0

1. ✦This toolbox is for reading/writing basic Vaa3D data file formats (image files .RAW, .TIFF, marker file .marker, point cloud file .apo, neuron file .swc which can indeed be used to describe any complicated graph) in Matlab. This is good for post-analysis of the the image analysis and measurements. Download here.
   

2. ✦Note: you may need libtiff library if you have not already have one in your search path. You may also need to by-pass or update the default Matlab libtiff library file as Matlab uses an old version of libtiff! See this Q&A for how to do it.
   

Vaa3D Plugins

1. ✦You can check the detailed descriptions at Vaa3D Plugins Page.
   

VANO

1. ✦A tri-view based 3D image object annotator. Vaa3D can export the cell segmentation to VANO files and thus get them annotated conveniently. Download here.